Last updated on 22 October 2025 by Brisbane Livewell Clinic
Gut Microbiome Testing Australia – Book the Best Test for Your Gut Health
Gut microbiome testing Australia offers people a way to understand the health of their digestive system and how it may be influencing the rest of their body.
Gut microbiome testing in Australia allows you to assess the health of your gut bacteria using at-home stool sample kits, revealing how your microbiome affects digestion, immunity, inflammation, and mental wellbeing. At Brisbane Livewell Clinic, our Naturopaths use microbiome testing as a powerful diagnostic tool to personalise your Wellness Plan and help identify the root cause of your symptoms.
Key Takeaways
- Gut microbiome testing in Australia helps assess the balance of bacteria and other microorganisms in your gut
- These tests can highlight imbalances that may be contributing to bloating, fatigue, skin issues, and mood problems
- At-home testing kits are available, with our Naturopaths then offering interpretation and tailored treatment recommendations
- Testing options include Microba, GI-MAP, and CDSA with prices ranging from $150 to $600 for the test kits, with consultations with our Naturopaths additional
- Microbiome testing is relevant for gut health, immunity, hormonal balance, mental wellbeing and chronic health conditions
- Results can be used by our Naturopaths at Brisbane Livewell Clinic to support targeted interventions such as probiotics, dietary changes, and lifestyle adjustments
Introduction
The state of your gut microbiome can affect far more than just your digestion. From your skin to your stress levels, your gut flora plays a critical role in your overall wellbeing. With more Australians exploring the root cause of symptoms that conventional tests fail to explain, gut microbiome testing is fast becoming a valuable health tool.
Gut Health Testing Australia enables both practitioners (usually Naturopaths and Nutritionists) and their patients to go beyond symptom management and work toward genuine restoration of balance.
Gut microbiome testing provides detailed insight into the bacterial makeup of your gut. These tests measure not only diversity but also the presence of beneficial and harmful strains, helping pinpoint which microbes may be driving chronic inflammation, food sensitivities or poor immune function.
If you’re struggling with unexplained symptoms or chronic health complaints, your microbiome may be the missing piece.
What Is the Gut Microbiome?
The gut microbiome refers to the trillions of microorganisms that live in the digestive tract, mostly in the large intestine. These include bacteria, viruses, fungi and protozoa. Most are harmless or beneficial, playing a key role in digestion, nutrient absorption, immune regulation and hormone production.
What is Dysbiosis?
A healthy microbiome is diverse and well balanced. When this ecosystem is thrown out of balance, it’s called dysbiosis. Dysbiosis can lead to or worsen many health concerns including irritable bowel syndrome (IBS), anxiety, acne, autoimmune disease, chronic fatigue and more.
That’s why microbiome testing, also called Gut Health Testing Australia, is often used by Naturopaths and Integrative GPs to understand what’s really going on below the surface.
What does Gut Microbiome Testing Australia do?
A gut microbiome test does not diagnose disease, but it helps practitioners understand how your gut health may be contributing to symptoms throughout your body. You may have SIBO, candida, overgrowth of gut bacteria, Leaky Gut Syndrome, or a number of other health issues – this test helps your Naturopath or Clinical Nutritionist find the reason for your health symptoms.
And Gut Health Testing in Australia also tells your Naturopath exactly which prebiotics and/or probiotics and other supplements your body needs to begin to heal.
Why People Choose Gut Microbiome Testing in Australia
Many people in Australia choose to have their gut microbiome tested, particularly when they have health concerns like the following:
- Unexplained symptoms – fatigue, bloating, headaches, skin flare-ups
- Diagnosed conditions (or suspected conditions) such as SIBO, IBS, IBD, eczema, depression or anxiety
- Hormonal imbalances, including oestrogen dominance and PMS
- Food intolerances or frequent bloating after meals
- Recurrent thrush or infections
- Candida (sometimes called “thrush”) overgrowth in the gut
- Low immunity or frequent colds
- Weight gain or difficulty losing weight
- Preventative health and biohacking
Australian patients are increasingly aware of the gut-brain axis and the connection between gut flora and chronic health issues. Gut Health Testing Australia allows a more tailored, evidence-informed approach to treatment to be taken by your Naturopath.
When Should You Have Gut Microbiome Testing?
You might consider microbiome testing if you experience:
- Bloating, constipation, diarrhoea or reflux
- Food intolerances or poor digestion
- Skin conditions such as eczema, acne or rosacea
- Chronic fatigue or brain fog
- Anxiety, depression or mood swings
- PMS, PCOS or other hormone imbalances
- Autoimmune conditions or chronic inflammation
- Frequent infections or poor immune response
A microbiome test can help identify why symptoms persist despite clean eating or supplementation.
Types of Gut Microbiome Tests Available in Australia
The most commonly available microbiome tests include:
Complete Microbiome Mapping (GI-MAP or similar)
Offers DNA-based analysis of gut bacteria, viruses, parasites and fungi, and includes markers of inflammation and digestive function.
Gut Health Stool Tests
These are broader panels that look at microbial balance, digestion, inflammation and sometimes markers like SCFAs (short-chain fatty acids).
Gut Microbiome Tests from Online Labs
These provide insights into your microbiome diversity with limited clinical markers.
Functional Stool Analysis
This is used in integrative clinics to assess digestion, absorption, inflammation and microbiome status in more depth.
Practitioner-only tests like GI-MAP and CDSA (Comprehensive Digestive Stool Analysis) provide greater clinical relevance, while consumer tests like Microba and i-Screen offer general insight and accessibility.
Which Microbiome Test Does Brisbane Livewell Clinic Use?
While it can vary, our Naturopath Practitioners often use Microba Insight as their gut microbe test kit of choice. This test:
- Is a DNA-based test using next-generation sequencing
- Provides detailed functional analysis and species-level identification
- Includes dietary recommendations and comparison to healthy population data
- Includes a Report from Microba for interpretation by your Naturopath
- And is easy to carry out in your own home
- Cost: $250–$350
How Gut Microbiome Testing Works
Microbiome testing is generally done via a stool sample, collected at home. The kit includes instructions, a sample container, and a reply-paid envelope to post it back to the lab. After analysis of your Gut Health Test Australia, your results are sent to you directly or via your practitioner.
Turnaround time varies between labs. Practitioner-only testing is usually ordered through a Naturopath, Integrative GP or Functional Medicine Practitioner, who interprets the results and helps plan the next steps.
How the Testing Process Works
- Have an Initial Naturopath Consultation at Brisbane Livewell Clinic, Wavell Heights or Cannon Hill
- Collect a stool sample using the instructions provided
- Return your sample by mail to the laboratory in the prepaid envelope
- Results are usually available within 2 to 4 weeks
- Review results with a Brisbane Livewell Clinic Naturopath to guide your treatment.
These tests are non-invasive and can be done from home.
Benefits of Microbiome Testing for Specific Conditions
IBS and Bloating
Identifying bacterial imbalances or parasites that may be contributing.
Mood Disorders
Highlighting disruptions in the gut-brain axis.
Hormonal Imbalances
Assisting in oestrogen clearance and liver detox pathways.
Recurrent Infections
Checking for fungal overgrowth or immune suppression.
Skin Conditions
Understanding inflammatory triggers and leaky gut connections.
Chronic Fatigue and Brain Fog
Assessing gut integrity and mitochondrial stress.
Gut Health Testing Australia doesn’t just explain symptoms. It supports clinical decisions made in partnership with your Naturopath that can dramatically shift your health outcomes over time.
What Your Results Will Show
Reports may include:
- A breakdown of dominant and minor bacterial strains
- Diversity score and gut microbial balance
- Presence of pro-inflammatory or pathogenic bacteria
- Functional markers (e.g. butyrate production, lactate, bile acid metabolism)
- Indicators of leaky gut or immune activation
- Enzyme production and digestive performance
- Suggestions for specific probiotic strains or dietary interventions
Some test reports also show how your microbiome compares to healthy reference populations.
What Happens After the Test?
Your Brisbane Livewell Clinic Naturopath will prepare a Wellness Plan for you, which may include:
Targeted probiotics
Based on what bacteria are missing.
Prebiotics
Fibre or resistant starches to feed beneficial strains.
Herbal antimicrobials
To reduce pathogenic overgrowths.
Digestive enzymes
To support nutrient absorption.
L-glutamine, zinc or collagen
For gut lining repair.
Nutrition and Diet changes
Adjusting fibre, FODMAPs or fermented food intake.
Stress and sleep support
To reduce immune disruption and improve resilience.
Testing allows for precision and avoids the one-size-fits-all approach that often fails in chronic cases.
Is Microbiome Testing Scientifically Valid?
DNA-based microbiome testing is supported by growing research and is widely used in functional and integrative medicine. It is not diagnostic in the conventional medical sense, but when interpreted correctly by a trained Naturopath, it provides valuable insights into patterns and imbalances.
The quality of interpretation matters more than the raw data, especially when linking microbial patterns with immune or hormonal issues. That is why we do not recommend you just purchase a test kit yourself online.
Can You Claim Microbiome Tests on Medicare?
Unfortunately you cannot claim microbiome tests on Medicare. Microbiome testing and Gut Health Testing in Australia is privately funded and is not eligible for Medicare rebates.
Conclusion
Gut microbiome testing in Australia offers a powerful way to understand your gut health and personalise your path to better digestion, energy, skin and mood. Whether you’re just starting your gut health journey or seeking answers after years of unexplained symptoms, these at-home tests can provide clarity and direction.
With accurate gut health testing around Australia (available in-Clinic at Wavell Heights or Cannon Hill, as well as online videoconference) and expert interpretation from our Naturopaths at Brisbane Livewell Clinic, you can make confident decisions to restore the balance of your system from the inside out.
Book an appointment with your Naturopath by clicking the button below or by calling our helpful Reception team on (07) 3861 5881.
FAQs about Gut Microbiome Testing
1. What is microbiome testing used for?
Microbiome testing identifies the bacterial balance in your gut and how it may contribute to symptoms. It helps guide targeted probiotics, herbs and diet changes.
2. How do I get a microbiome test in Australia?
You can order a test through a Brisbane Livewell Clinic Naturopath or directly from online providers like Microba. Most kits are delivered to your home and returned via post.
3. What are the signs of an unhealthy gut microbiome?
Symptoms include bloating, fatigue, poor immunity, skin issues, constipation or mood swings. Testing helps confirm if dysbiosis is present.
4. Is microbiome testing covered by Medicare?
No, these tests are not Medicare-funded. They are paid privately, though some extras cover may apply to consultations.What is the
5. between Microba and GI-MAP?
Microba focuses on mapping bacterial diversity and function, while GI-MAP includes pathogens, parasites and inflammation markers. The best test depends on your symptoms.
6. Can microbiome testing help with anxiety or depression?
Yes, gut bacteria influence the gut-brain axis. Testing may identify imbalances that affect neurotransmitter production or inflammation.
7. How accurate are microbiome tests?
DNA-based sequencing provides high accuracy for species identification. Interpretation by a qualified Brisbane Livewell Clinic Naturopath ensures meaningful results.
8. Do I need to stop probiotics before a microbiome test?
You may be asked to pause probiotics for 3–7 days before testing. Follow the lab’s instructions closely for best results.
9. How long do results take?
Most microbiome test results are ready within 2 to 4 weeks. Your Naturopath at Brisbane Livewell Clinic will then go over the findings and treatment plan.
10. Can microbiome testing help with hormonal issues?
Certain gut bacteria can affect oestrogen metabolism and detoxification. Gut Health Testing Australia can clarify if your gut is impacting hormone balance.
11. How often should I do microbiome testing?
Many patients test once and retest after 3 to 6 months of treatment. Ongoing issues may benefit from annual check-ins.
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